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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs4592345 chr10:88889314 G/A FAM35B chr10:46897641-46939143:+ -0.37 -7.22 2.05E-12 Box Plot
THCA rs4597385 chr18:8207244 G/C SCN1A chr2:166845670-167005724:- -0.29 -6.08 2.46E-9 Box Plot
THCA rs4598253 chr8:9890304 A/T SGK223 chr8:8175258-8244008:- 0.37 7.23 1.9E-12 Box Plot
THCA rs4600781 chr3:125802268 C/T ROPN1 chr3:123687368-123711025:- -0.34 -6.29 7.06E-10 Box Plot
THCA rs4601053 chr5:46101836 T/C LOC647121 chr1:121260910-121313686:+ 0.35 7.39 6.44E-13 Box Plot
THCA rs4604334 chr7:33111351 A/G FKBP9L chr7:55748767-55780945:- 0.4 8.96 7.3E-18 Box Plot
THCA rs4605391 chr2:101053094 A/G LOC285359 chr3:101431278-101432259:+ 0.36 8.1 4.73E-15 Box Plot
THCA rs4610752 chr8:10248962 A/G SGK223 chr8:8175258-8244008:- 0.41 7.96 1.24E-14 Box Plot
THCA rs4611112 chr10:88921651 G/T FAM35B chr10:46897641-46939143:+ 0.37 7.23 1.87E-12 Box Plot
THCA rs4612230 chr7:33118273 A/T FKBP9L chr7:55748767-55780945:- 0.34 7.3 1.19E-12 Box Plot
THCA rs4613309 chr2:101142203 G/A LOC285359 chr3:101431278-101432259:+ 0.36 7.89 2.07E-14 Box Plot
THCA rs4618656 chr8:10969235 T/A SGK223 chr8:8175258-8244008:- 0.4 7.3 1.21E-12 Box Plot
THCA rs462147 chr2:119463272 A/G CHRM5 chr15:34260921-34359658:+ -0.3 -5.94 5.62E-9 Box Plot
THCA rs4628843 chr13:82083921 T/C LHX1 chr17:35294084-35301912:+ 0.28 6.21 1.17E-9 Box Plot
THCA rs4629609 chr5:45747938 A/C LOC647121 chr1:121260910-121313686:+ 0.37 7.83 3.17E-14 Box Plot